Li, Jia-Tang, Li, Yang, Murphy, Robert W, Rao, Ding-Qi, Zhang, Ya-Ping, "Phylogenetic resolution and systematics of the Asian tree frogs, Rhacophorus (Rhacophoridae, Amphibia)." Zoologica Scripta, 2012.
Hong, Wang, Yang, Li, Jie, Zhang, Wenjing, Fang, Yan, Li, Heng, Xu, Jian, Zhao, "Study on setting up experiments of bdellovibrio bacteriovorus in innovative microbiology experimental teaching." Experimental Technology and Management, 2012.
Jia-Tang Li, Yang Li, Sebastian Klaus, Ding-Qi Rao, David Hillis, Ya-Ping Zhang, "Diversification of rhacophorid frogs provides evidence for accelerated faunal exchange between India and Eurasia during the Oligocene." Proceedings of the National Academy of Sciences, 2013.
Long Hu, Chao Di, Mingxuan Kai, Yu-Cheng Yang, Yang Li, Yunjiang Qiu, Xihao Hu, Kevin Yip, Michael Zhang, Zhi Lu, "A common set of distinct features that characterize noncoding RNAs across multiple species." Nucleic acids research, 2015.
Jia-Tang Li, Ji-Shan Wang, Hui-Huang Nian, Spartak Litvinchuk, Jichao Wang, Yang Li, Ding-Qi Rao, Sebastian Klaus, "Amphibians crossing the bering land bridge: evidence from holarctic treefrogs (Hyla, Hylidae, Anura)." Molecular phylogenetics and evolution, 2015.
Yu-Cheng Yang, Chao Di, Boqin Hu, Meifeng Zhou, Yifang Liu, Nanxi Song, Yang Li, Jumpei Umetsu, Zhi Lu, "CLIPdb: a CLIP-seq database for protein-RNA interactions." BMC genomics, 2015.
Yang Wu, Rihao Qu, Yiming Huang, Binbin Shi, Mengrong Liu, Yang Li, Zhi Lu, "RNAex: an RNA secondary structure prediction server enhanced by high-throughput structure-probing data." Nucleic acids research, 2016.
Li, Yang Eric, Xiao, Mu, Shi, Binbin, Yang, Yu-Cheng T, Wang, Dong, Wang, Fei, Marcia, Marco, Lu, Zhi John, "Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA--protein binding sites." Genome biology, 2017.
Yang, Yang, Chen, Lei, Gu, Jin, Zhang, Hanshuo, Yuan, Jiapei, Lian, Qiuyu, Lv, Guishuai, ..., Li, Yang, ..., Zhang, Michael Q. & Lu, Zhi John "Recurrently deregulated lncRNAs in hepatocellular carcinoma." Nature communications, 2017.
Teng, Shuaishuai, Li, Yang Eric, Yang, Ming, Qi, Rui, Huang, Yiming, Wang, Qianyu, Zhang, Yanmei, Chen, Shanwen, Li, Shasha, Lin, Kequan, ..., Lu, Zhi John & Wang, Dong "Tissue-specific transcription reprogramming promotes liver metastasis of colorectal cancer." Cell research, 2020.
Li, Yang Eric, Preissl, Sebastian, Hou, Xiaomeng, Zhang, Ziyang, Zhang, Kai, Qiu, Yunjiang, Poirion, Olivier B, Li, Bin, Chiou, Joshua, Liu, Hanqing, others, "An atlas of gene regulatory elements in adult mouse cerebrum." Nature, 2021.
Network, BRAIN Initiative Cell Census, "A multimodal cell census and atlas of the mammalian primary motor cortex." Nature, 2021.
Zhang, Kai, Hocker, James D, Miller, Michael, Hou, Xiaomeng, Chiou, Joshua, Poirion, Olivier B, Qiu, Yunjiang, Li, Yang E, Gaulton, Kyle J, Wang, Allen, ..., Bing, Ren "A single-cell atlas of chromatin accessibility in the human genome." Cell, 2021.
Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S, Aldridge, Andrew I, Ament, Seth A, Bartlett, Anna, Behrens, M Margarita, ..., Li, Yang Eric, ..., Zeng, Hongkui & Mukamel Eran A. "A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex." Nature, 2021.
Hocker, James D, Poirion, Olivier B, Zhu, Fugui, Buchanan, Justin, ..., Li, Yang E, ..., others, "Cardiac cell type--specific gene regulatory programs and disease risk association." Science advances, 2021.
Bakken, Trygve E, Jorstad, Nikolas L, Hu, Qiwen, Lake, Blue B, Tian, Wei, ..., Li, Yang, ..., Lein, Ed S. "Comparative cellular analysis of motor cortex in human, marmoset and mouse." Nature, 2021.
Fang, Rongxin, Preissl, Sebastian, Li, Yang, Hou, Xiaomeng, Lucero, Jacinta, Wang, Xinxin, Motamedi, Amir, Shiau, Andrew K, Zhou, Xinzhu, Xie, Fangming, ..., Ren, Bing "Comprehensive analysis of single cell ATAC-seq data with SnapATAC." Nature communications, 2021.
Liu, Hanqing, Zhou, Jingtian, Tian, Wei, Luo, Chongyuan, Bartlett, Anna, Aldridge, Andrew, Lucero, Jacinta, Li, Yang Eric, ..., Ecker Joseph R. "DNA methylation atlas of the mouse brain at single-cell resolution." Nature, 2021.
Zhu, Chenxu, Zhang, Yanxiao, Li, Yang Eric, Lucero, Jacinta, Behrens, M Margarita, Ren, Bing, "Joint profiling of histone modifications and transcriptome in single cells from mouse brain." Nature Methods, 2021.
Yan, Jian, Qiu, Yunjiang, Dos Santos, Andr{\'e} M Ribeiro, Yin, Yimeng, Li, Yang E, Vinckier, Nick, Nariai, Naoki, Benaglio, Paola, Raman, Anugraha, ..., Taipale, Jussi & Ren, Bing "Systematic analysis of binding of transcription factors to noncoding variants." Nature, 2021.
Yang Eric Li, Sebastian Preissl, Michael Miller, Nicholas D. Johnson, Zihan Wang, Henry Jiao, Chenxu Zhu, Zhaoning Wang, Yang Xie, Olivier Poirion, Colin Kern, Antonio Pinto-Duarte, Wei Tian, Kimberly Siletti, Nora Emerson, Julia Osteen, Jacinta Lucero, Lin Lin, Qian Yang, Quan Zhu, Sarah Espinoza, Anna Marie Yanny, Julie Nyhus, Nick Dee, Tamara Casper, Nadiya Shapovalova, Daniel Hirschstein, Rebecca D. Hodge, Sten Linnarsson, Trygve Bakken, Boaz Levi, C. Dirk Keene, Jingbo Shang, Ed S. Lein, Allen Wang, M. Margarita Behrens, Joseph R. Ecker, Bing Ren. "A comparative atlas of single-cell chromatin accessibility in the human brain." bioRxiv, 2022. doi: https://doi.org/10.1101/2022.11.09.515833
Poster at The 7th Chinese Conference on Bioinformatics & Systems Biology, Chengdu, China
Poster at The 5th annual Brain Research through Advancing Innovative Neurotechnologies (BRAIN)® Initiative Investigators Meeting, Washington, DC
Talk at Neuroscience 2019, Society for Neuroscience, Chicago, IL
Joint talk at The 6th annual Brain Research through Advancing Innovative Neurotechnologies (BRAIN)® Initiative Investigators Meeting, Virtual meeting @San Diego
Joint talk at The 6th BRAIN Initiative Cell Census Network (BICCN) Spring 2020 Virtual Meeting, Virtual meeting @San Diego
Joint talk at The 7th BRAIN Initiative Cell Census Network (BICCN) Spring 2021 Virtual Meeting, Virtual meeting @San Diego
Talk at The 7th annual Brain Research through Advancing Innovative Neurotechnologies (BRAIN)® Initiative Investigators Meeting, Virtual meeting @San Diego
Talk at BICCN Data Exploration Workshop - 2021, Virtual meeting @San Diego
Talk at ENCODE Monthly Meeting, Virtual meeting @San Diego
Invited talk at Duke Single Cell Initiative (SCI) Seminar, Molecular Physiology Institute, Duke University, Durham, NC 27701
Invited talk at SD research association, Virtual meeting @San Diego
Invited lecture at Cold Spring Harbor Laboratory (CSHL), Cold Spring Harbor, NY 11724